CDS

Accession Number TCMCG042C70414
gbkey CDS
Protein Id XP_016502550.1
Location complement(join(4024..4155,5108..5204,5605..5690,5889..5960,6037..6155,7051..7158,7825..7885,8483..8542,8897..8957,9046..9137,9597..9683,9761..>9850))
Gene LOC107820730
GeneID 107820730
Organism Nicotiana tabacum

Protein

Length 354aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA319578
db_source XM_016647064.1
Definition PREDICTED: ribosomal RNA small subunit methyltransferase B-like, partial [Nicotiana tabacum]

EGGNOG-MAPPER Annotation

COG_category A
Description Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K03500        [VIEW IN KEGG]
EC 2.1.1.176        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0000154        [VIEW IN EMBL-EBI]
GO:0001510        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006364        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008168        [VIEW IN EMBL-EBI]
GO:0008169        [VIEW IN EMBL-EBI]
GO:0008173        [VIEW IN EMBL-EBI]
GO:0008649        [VIEW IN EMBL-EBI]
GO:0008757        [VIEW IN EMBL-EBI]
GO:0009383        [VIEW IN EMBL-EBI]
GO:0009451        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016072        [VIEW IN EMBL-EBI]
GO:0016434        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016741        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0031167        [VIEW IN EMBL-EBI]
GO:0032259        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043414        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0070475        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:0140102        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]

Sequence

CDS:  
CTGCAGAATGTAAAGCTCGCTAAGGTTGCTCTTAGATCTGGTGCCGGTAACTTGGTTAATGGGATTCTCAGGAAACTAATTGTCCTTAAGGAGAGTGATTCCCTTCCGGCAGTAAAAGTGGACGGTGATGATCGTCAGCAAGCACGTGGTCTTGCCACTCTTTACTCTCATCCAGTTTGGATGGTAAGAAGATGGACAAAGTATTTTGGACGGGACGAAGCTATTAAGCTTATGACATGGAATAACAGCTCTCCCAGTTTCAGTCTACGGGCAAATACTGGGAAAGGTTTGACAGGGGCTGATCTGGTCTCAAGGCTTAAAATGTTGAAGGTTCCACATGAGCCTTCTCTATACTTGGATGATTTTGTTCGTATTAAAACTGGAATGCAGAATGTTATACAGGCTGGGTTACTAAAAGAAGGCTTCTGTGCAGTCCAGGATGAAAGTGCTGGATTAGTAGTCTCTATTGTTGATCCTCAACCTGGTGAGAGCATTATTGATTGTTGTGCTGCTCCAGGAGGGAAAACCTTGTTCATGGCTTCCCGCTTGAATGGCCAAGGTACATTATTTGCCGTTGACATAAATGAAGGTCGGTTGCGGATACTTAAAGAGACAGCCAAATTGCACCAAGTTATTGATGTTATCAGTACTATCCATGCTGATCTTCGAACATTTTCTACCGATAAGGTCGTAGAATGGGATAAAGTCTTGCTGGATGCACCTTGTTCAGGGCTGGGTGTTCTTTCTAAGCGAGCAGATTTGCGTTGGAATAGGAAACAGGAAGATATGGAGCAGCTTAAACATTTACAGGATGAACTTCTCGATTCAGCTTCCAGGTTGGTGAAGCCAGGTGGAGTTATAATATACAGCACGTGTTCCATTGACCCTGAAGAAAATGAGGAAAGAATTGAAGCTTTTCTTCTAAGGCATCCAGAATTCGAAATTGATCCTGTGAACAGATATGTACCGGAGGATTTTGTCACTACACGAGGTTTCTACATGTCTAATCCTGTGAAGCATGAACTTGATGGAGCTTTTGCAGCTCGTCTGGCTAGATCTCAATAA
Protein:  
LQNVKLAKVALRSGAGNLVNGILRKLIVLKESDSLPAVKVDGDDRQQARGLATLYSHPVWMVRRWTKYFGRDEAIKLMTWNNSSPSFSLRANTGKGLTGADLVSRLKMLKVPHEPSLYLDDFVRIKTGMQNVIQAGLLKEGFCAVQDESAGLVVSIVDPQPGESIIDCCAAPGGKTLFMASRLNGQGTLFAVDINEGRLRILKETAKLHQVIDVISTIHADLRTFSTDKVVEWDKVLLDAPCSGLGVLSKRADLRWNRKQEDMEQLKHLQDELLDSASRLVKPGGVIIYSTCSIDPEENEERIEAFLLRHPEFEIDPVNRYVPEDFVTTRGFYMSNPVKHELDGAFAARLARSQ